Index

A

average_mode_pairs() (in module pymkmkit.vasp_freq)

B

build_fnf() (in module pymkmkit.network_reader)

build_ped() (in module pymkmkit.network_reader)

C

clean_none() (in module pymkmkit.yaml_writer)

E

electronic_energy (pymkmkit.network_reader.State attribute) ElementaryStep (class in pymkmkit.network_reader) evaluate_paths() (in module pymkmkit.network_reader) extract_ase_vibration_hessian() (in module pymkmkit.vasp_freq) extract_execution_timestamp() (in module pymkmkit.vasp_freq) extract_frequencies() (in module pymkmkit.vasp_freq) extract_hessian_from_dynamical_modes() (in module pymkmkit.vasp_freq)

extract_hubbard_u_settings() (in module pymkmkit.vasp_freq) extract_incar_settings() (in module pymkmkit.vasp_freq) extract_ionic_energies() (in module pymkmkit.vasp_freq) extract_perturbed_hessian() (in module pymkmkit.vasp_freq) extract_potcar_info() (in module pymkmkit.vasp_freq) extract_total_energies() (in module pymkmkit.vasp_freq) extract_vasp_version() (in module pymkmkit.vasp_freq)

F

file (pymkmkit.network_reader.State attribute) formula_from_atom_order() (in module pymkmkit.vasp_freq) forward_barrier_electronic (pymkmkit.network_reader.ElementaryStep attribute)

forward_equation (pymkmkit.network_reader.ElementaryStep attribute) forward_total_barrier (pymkmkit.network_reader.ElementaryStep attribute) forward_zpe_correction (pymkmkit.network_reader.ElementaryStep attribute) frequencies_from_partial_hessian() (in module pymkmkit.vasp_freq)

G

geometry_direct_strings() (in module pymkmkit.vasp_freq)

get_version() (in module pymkmkit._version)

I

InlineList (class in pymkmkit.yaml_writer)

L

lattice_vectors() (in module pymkmkit.vasp_freq)

M

module pymkmkit._version pymkmkit.cli pymkmkit.network_reader pymkmkit.vasp_freq pymkmkit.yaml_writer

N

name (pymkmkit.network_reader.ElementaryStep attribute) (pymkmkit.network_reader.ReactionPath attribute) (pymkmkit.network_reader.State attribute)

P

paired_modes_averaged (pymkmkit.network_reader.State attribute) parse_ase_vibrations() (in module pymkmkit.vasp_freq) parse_vasp_frequency() (in module pymkmkit.vasp_freq) parse_vasp_optimization() (in module pymkmkit.vasp_freq) pymkmkit._version module pymkmkit.cli module

pymkmkit.network_reader module pymkmkit.vasp_freq module pymkmkit.yaml_writer module

R

reaction (pymkmkit.network_reader.ElementaryStep attribute) reaction_heat_electronic (pymkmkit.network_reader.ElementaryStep attribute) reaction_heat_total (pymkmkit.network_reader.ElementaryStep attribute) reaction_heat_zpe_correction (pymkmkit.network_reader.ElementaryStep attribute) ReactionPath (class in pymkmkit.network_reader)

read_network() (in module pymkmkit.network_reader) represent_inline_list() (in module pymkmkit.yaml_writer) reverse_barrier_electronic (pymkmkit.network_reader.ElementaryStep attribute) reverse_equation (pymkmkit.network_reader.ElementaryStep attribute) reverse_total_barrier (pymkmkit.network_reader.ElementaryStep attribute) reverse_zpe_correction (pymkmkit.network_reader.ElementaryStep attribute)

S

State (class in pymkmkit.network_reader)

step_type (pymkmkit.network_reader.ElementaryStep attribute)

T

total_reaction_energy (pymkmkit.network_reader.ReactionPath attribute)

W

write_yaml() (in module pymkmkit.yaml_writer)

Z

zpe_energy (pymkmkit.network_reader.State attribute)